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John F. Kelly, the White House chief of staff, has killed an effort by the head of the Environmental Protection Agency to stage public debates challenging climate change science, according to three people familiar with the deliberations, thwarting a plan that had intrigued President Trump even as it set off alarm bells among his top advisers.

The idea of publicly critiquing climate change on the national stage has been a notable theme for Scott Pruitt, the administrator of the E.P.A. For nearly a year he has championed the notion of holding military-style exercises known as red team, blue team debates, possibly to be broadcast live, to question the validity of climate change.

Mr. Pruitt has spoken personally with Mr. Trump about the idea, and the president expressed enthusiasm for it, according to people familiar with the conversations.