Alban C.

Baldet P.

Axiotis S.

Douce R. Purification and characterization of 3-methylcrotonyl-coenzyme A carboxylase from higher plant mitochondria. Plant Physiol. 102 : 957-965 View in Article PubMed

Google Scholar

Alvarez C.

García I.

Moreno I.

Pérez-Pérez M.E.

Crespo J.L.

Romero L.C.

Gotor C. Cysteine-generated sulfide in the cytosol negatively regulates autophagy and modulates the transcriptional profile in Arabidopsis. Plant Cell. 24 : 4621-4634 View in Article Scopus (22)

PubMed

Crossref

Google Scholar

Anderson M.D.

Che P.

Song J.P.

Nikolau B.J.

Wurtele E.S. 3-Methylcrotonyl coenzyme A carboxylase is a component of the mitochondrial leucine catabolic pathway in plants. Plant Physiol. 118 : 1127-1138 View in Article PubMed

Crossref

Google Scholar

Araújo W.L.

Ishizaki K.

Nunes-Nesi A.

Larson T.R.

Tohge T.

Krahnert I.

Witt S.

Obata T.

Schauer N.

Graham I.A.

et al. Identification of the 2-hydroxyglutarate and isovaleryl-CoA dehydrogenases as alternative electron donors linking lysine catabolism to the electron transport chain of Arabidopsis mitochondria. Plant Cell. 22 : 1549-1563 View in Article Scopus (81)

PubMed

Crossref

Google Scholar

Arnold A.

Sajitz-Hermstein M.

Nikoloski Z. Effects of varying nitrogen sources on amino acid synthesis costs in Arabidopsis thaliana under different light and carbon-source conditions. PLoS One. 10 : e0116536 View in Article Google Scholar

Avin-Wittenberg T.

Bajdzienko K.

Wittenberg G.

Alseekh S.

Tohge T.

Bock R.

Giavalisco P.

Fernie A.R. Global analysis of the role of autophagy in cellular metabolism and energy homeostasis in Arabidopsis seedlings under carbon starvation. Plant Cell. 27 : 306-322 View in Article Scopus (1)

PubMed

Crossref

Google Scholar

Baerenfaller K.

Massonnet C.

Walsh S.

Baginsky S.

Bühlmann P.

Hennig L.

Hirsch-Hoffmann M.

Howell K.A.

Kahlau S.

Radziejwoski A.

et al. Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Mol. Syst. Biol. 8 : 606 View in Article Scopus (57)

PubMed

Crossref

Google Scholar

Binder S. Branched-chain amino acid metabolism in Arabidopsis thaliana. Arabidopsis Book. 8 : e0137 View in Article Crossref

Google Scholar

Bohner A.

Kojima S.

Hajirezaei M.

Melzer M.

von Wiren N. Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast. Plant J. 81 : 377-387 View in Article PubMed

Crossref

Google Scholar

Bourgis F.

Kilaru A.

Cao X.

Ngando-Ebongue G.F.

Drira N.

Ohlrogge J.B.

Arondel V. Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning. Proc. Natl. Acad. Sci. USA. 108 : 12527-12532 View in Article Scopus (82)

PubMed

Crossref

Google Scholar

Coruzzi G.M. Primary N-assimilation into amino acids in Arabidopsis. Arabidopsis Book. 2 : e0010 View in Article Crossref

Google Scholar

Couturier J.

Touraine B.

Briat J.F.

Gaymard F.

Rouhier N. The iron-sulfur cluster assembly machineries in plants: current knowledge and open questions. Front. Plant Sci. 4 : 259 View in Article PubMed

Google Scholar

Datko A.H.

Mudd S.H. Responses of sulfur-containing compounds in Lemna paucicostata Hegelm. 6746 to changes in availability of sulfur sources. Plant Physiol. 75 : 474-479 View in Article PubMed

Crossref

Google Scholar

Engqvist M.

Drincovich M.F.

Fluegge U.-I.

Maurino V.G. Two D-2-hydroxy-acid dehydrogenases in Arabidopsis thaliana with catalytic capacities to participate in the last reactions of the methylglyoxal and beta-oxidation pathways. J. Biol. Chem. 284 : 25026-25037 View in Article Scopus (38)

PubMed

Crossref

Google Scholar

Engqvist M.K.M.

Kuhn A.

Wienstroer J.

Weber K.

Jansen E.E.

Jakobs C.

Weber A.P.

Maurino V.G. Plant D-2-hydroxyglutarate dehydrogenase participates in the catabolism of lysine especially during senescence. J. Biol. Chem. 286 : 11382-11390 View in Article Scopus (19)

PubMed

Crossref

Google Scholar

Fernie A.R.

Stitt M. On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions. Plant Physiol. 158 : 1139-1145 View in Article Scopus (52)

PubMed

Crossref

Google Scholar

Fontaine J.X.

Tercé-Laforgue T.

Armengaud P.

Clément G.

Renou J.P.

Pelletier S.

Catterou M.

Azzopardi M.

Gibon Y.

Lea P.J.

et al. Characterization of a NADH-dependent glutamate dehydrogenase mutant of Arabidopsis demonstrates the key role of this enzyme in root carbon and nitrogen metabolism. Plant Cell. 24 : 4044-4065 View in Article Scopus (27)

PubMed

Crossref

Google Scholar

Galili G.

Avin-Wittenberg T.

Angelovici R.

Fernie A.R. The role of photosynthesis and amino acid metabolism in the energy status during seed development. Front. Plant Sci. 5 : 447 View in Article PubMed

Crossref

Google Scholar

Glawischnig E.

Gierl A.

Tomas A.

Bacher A.

Eisenreich W. Retrobiosynthetic nuclear magnetic resonance analysis of amino acid biosynthesis and intermediary metabolism. Metabolic flux in developing maize kernels. Plant Physiol. 125 : 1178-1186 View in Article Scopus (44)

PubMed

Crossref

Google Scholar

Götz K.-P.

Staroske N.

Radchuk R.

Emery R.J.

Wutzke K.D.

Herzog H.

Weber H. Uptake and allocation of carbon and nitrogen in Vicia narbonensis plants with increased seed sink strength achieved by seed-specific expression of an amino acid permease. J. Exp. Bot. 58 : 3183-3195 View in Article Scopus (11)

PubMed

Crossref

Google Scholar

Goyer A.

Collakova E.

Shachar-Hill Y.

Hanson A.D. Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway. Plant Cell Physiol. 48 : 232-242 View in Article Scopus (32)

PubMed

Crossref

Google Scholar

Gu L.

Jones A.D.

Last R.L. Broad connections in the Arabidopsis seed metabolic network revealed by metabolite profiling of an amino acid catabolism mutant. Plant J. 61 : 579-590 View in Article Scopus (40)

PubMed

Crossref

Google Scholar

Hannah M.A.

Caldana C.

Steinhauser D.

Balbo I.

Fernie A.R.

Willmitzer L. Combined transcript and metabolite profiling of Arabidopsis grown under widely variant growth conditions facilitates the identification of novel metabolite-mediated regulation of gene expression. Plant Physiol. 152 : 2120-2129 View in Article Scopus (26)

PubMed

Crossref

Google Scholar

Ishihara H.

Obata T.

Sulpice R.

Fernie A.R.

Stitt M. Quantifying protein synthesis and degradation in Arabidopsis by dynamic 13CO 2 labeling and analysis of enrichment in individual amino acids in their free pools and in protein. Plant Physiol. 168 : 74-93 View in Article Scopus (1)

PubMed

Crossref

Google Scholar

Ivanov A.

Kameka A.

Pajak A.

Bruneau L.

Beyaert R.

Hernández-Sebastià C.

Marsolais F. Arabidopsis mutants lacking asparaginases develop normally but exhibit enhanced root inhibition by exogenous asparagine. Amino Acids. 42 : 2307-2318 View in Article Scopus (7)

PubMed

Crossref

Google Scholar

Jin Z.P.

Xue S.

Luo Y.

Tian B.

Fang H.

Li H.

Pei Y. Hydrogen sulfide interacting with abscisic acid in stomatal regulation responses to drought stress in Arabidopsis. Plant Physiol. Biochem. 62 : 41-46 View in Article Scopus (32)

PubMed

Crossref

Google Scholar

Joshi V.

Jander G. Arabidopsis methionine gamma-lyase is regulated according to isoleucine biosynthesis needs but plays a subordinate role to threonine deaminase. Plant Physiol. 151 : 367-378 View in Article Scopus (33)

PubMed

Crossref

Google Scholar

Joshi V.

Laubengayer K.M.

Schauer N.

Fernie A.R.

Jander G. Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell. 18 : 3564-3575 View in Article Scopus (36)

PubMed

Crossref

Google Scholar

Joshi V.

Joung J.G.

Fei Z.J.

Jander G. Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress. Amino Acids. 39 : 933-947 View in Article Scopus (41)

PubMed

Crossref

Google Scholar

Krüßel L.

Junemann J.

Wirtz M.

Birke H.

Thornton J.D.

Browning L.W.

Poschet G.

Hell R.

Balk J.

Braun H.P.

et al. The mitochondrial sulfur dioxygenase ETHYLMALONIC ENCEPHALOPATHY PROTEIN1 is required for amino acid catabolism during carbohydrate starvation and embryo development in Arabidopsis. Plant Physiol. 165 : 92-104 View in Article Scopus (6)

PubMed

Crossref

Google Scholar

Lam H.M.

Coschigano K.

Schultz C.

Melo-Oliveira R.

Tjaden G.

Oliveira I.

Ngai N.

Hsieh M.H.

Coruzzi G. Use of Arabidopsis mutants and genes to study amide amino acid biosynthesis. Plant Cell. 7 : 887-898 View in Article PubMed

Crossref

Google Scholar

Mazelis M. Amino acid catabolism. in: Miflin B.J. The Biochemistry of Plants. Academic Press , New York : 541-567 View in Article Crossref

Google Scholar

Medici L.O.

Nazareno A.C.

Gaziola S.A.

Schmidt D.

Azevedo R.A. Lysine metabolism. in: D'Mello J.P.F. Amino Acids in Higher Plants. Cabi Publishing , Boston : 234-250 View in Article Crossref

Google Scholar

Michaeli S.

Fromm H. Closing the loop on the GABA shunt in plants: are GABA metabolism and signaling entwined?. Front. Plant Sci. 6 : 419 View in Article Scopus (2)

PubMed

Crossref

Google Scholar

Miflin B.J.

Habash D.Z. The role of glutamine synthetase and glutamate dehydrogenase in nitrogen assimilation and possibilities for improvement in the nitrogen utilization of crops. J. Exp. Bot. 53 : 979-987 View in Article PubMed

Crossref

Google Scholar

Navarova H.

Bernsdorff F.

Doring A.C.

Zeier J. Pipecolic acid, an endogenous mediator of defense amplification and priming, is a critical regulator of inducible plant immunity. Plant Cell. 24 : 5123-5141 View in Article Scopus (61)

PubMed

Crossref

Google Scholar

Nelson D.L.

Cox M.M. Lehninger. Principles of Biochemistry. W. H. Freeman and Company , New York View in Article Google Scholar

Nigam S.N.

McConnell W.B. Studies on wheat plants using carbon-14 compounds. XIX. Observations on the metabolism of lysine-C14. Can. J. Biochem. Physiol. 41 : 1367-1371 View in Article PubMed

Crossref

Google Scholar

Oliver D.J.

Neuburger M.

Bourguignon J.

Douce R. Interaction between the component enzymes of the glycine decarboxylase multienzyme complex. Plant Physiol. 94 : 833-839 View in Article PubMed

Crossref

Google Scholar

Peng C.

Uygun S.

Shiu S.-H.

Last R.L. The impact of the branched-chain ketoacid dehydrogenase complex on amino acid homeostasis in Arabidopsis. Plant Physiol. https://doi.org/10.1104/pp.1115.00461 View in Article Crossref

Google Scholar

Pribat A.

Noiriel A.

Morse A.M.

Davis J.M.

Fouquet R.

Loizeau K.

Ravanel S.

Frank W.

Haas R.

Reski R.

et al. Nonflowering plants possess a unique folate-dependent phenylalanine hydroxylase that is localized in chloroplasts. Plant Cell. 22 : 3410-3422 View in Article Scopus (16)

PubMed

Crossref

Google Scholar

Rébeillé F.

Jabrin S.

Bligny R.

Loizeau K.

Gambonnet B.

Van Wilder V.

Douce R.

Ravanel S. Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses. Proc. Natl. Acad. Sci. USA. 103 : 15687-15692 View in Article Scopus (0)

PubMed

Crossref

Google Scholar

Riebeseel E.

Häusler R.E.

Radchuk R.

Meitzel T.

Hajirezaei M.R.

Emery R.J.

Küster H.

Nunes-Nesi A.

Fernie A.R.

Weschke W.

et al. The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos. Plant J. 61 : 350-363 View in Article Scopus (10)

PubMed

Crossref

Google Scholar

Sodek L.

Wilson C.N. Incorporation of leucine-14C and lysine-14C into protein in the developing endosperm of normal and opaque corn. Arch. Biochem. Biophys. 140 : 29-38 View in Article Scopus (32)

PubMed

Crossref

Google Scholar

Szecowka M.

Heise R.

Tohge T.

Nunes-Nesi A.

Vosloh D.

Huege J.

Feil R.

Lunn J.

Nikoloski Z.

Stitt M.

et al. Metabolic fluxes in an illuminated Arabidopsis rosette. Plant Cell. 25 : 694-714 View in Article Scopus (51)

PubMed

Crossref

Google Scholar

Toubiana D.

Batushansky A.

Tzfadia O.

Scossa F.

Khan A.

Barak S.

Zamir D.

Fernie A.R.

Nikoloski Z.

Fait A. Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. Plant J. 81 : 121-133 View in Article Scopus (2)

PubMed

Crossref

Google Scholar

Watanabe M.

Balazadeh S.

Tohge T.

Erban A.

Giavalisco P.

Kopka J.

Mueller-Roeber B.

Fernie A.R.

Hoefgen R. Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis. Plant Physiol. 162 : 1290-1310 View in Article Scopus (25)

PubMed

Crossref

Google Scholar

Witte C.-P.

Rosso M.G.

Romeis T. Identification of three urease accessory proteins that are required for urease activation in Arabidopsis. Plant Physiol. 139 : 1155-1162 View in Article Scopus (32)

PubMed

Crossref

Google Scholar