The clean-up is continuing and airlines are still working through a backlog of cancelled flights in Sydney after severe thunderstorms battered the city and surrounds, with giant hail falling in some parts.

Key points: The SES received more than 1,000 calls for assistance through the night

The SES received more than 1,000 calls for assistance through the night The effects of the storm are still being felt, with flights cancelled and people still without power

The effects of the storm are still being felt, with flights cancelled and people still without power More storm activity is expected this afternoon, but it is not expected to be as severe

Super cells moved through the Sydney basin and saw strong winds, heavy rain and intense lightning smash areas in every direction on Thursday evening, the Bureau of Meteorology (BOM) said.

Many travellers were forced to stay at Sydney Airport last night after 44 flight were cancelled during the storms.

Crowds filled Sydney Airport as early as 5:00am as airlines struggled to get through a backlog of flights. ( ABC News: Greg Hatch )

This morning has seen more cancellations and massive crowds at airline check-in from 5:00am.

The north of Sydney saw the heaviest rainfall, with up to a month's worth of rain falling in Mona Vale.

"In terms of rainfall the hardest-hit area was Mona Vale on the northern beaches, which saw about 120 millimetres over a period of about two or three hours," BOM forecaster Katerina Kovacevic said.

The hail was at its worst in the west of Sydney, with Blacktown, Leppington, Liverpool, Edmonton Park, Stanhope Gardens and Riverstone all being pummelled by golf-ball-sized hailstones.

The largest hailstones fell in western Sydney. ( Twitter: Cimmaron Sanders )

Substantial hail damage was reported in Blacktown, where 163 calls were made to the State Emergency Service (SES).

The SES received more than 1,000 calls for help overall and responded to 600 of those.

"Most of them were for flood damage, trees on roads and damage due to hail, cracked windows and sky lights, that sort of thing," Natasha Wainberg from the SES said.

There were also three separate rescues in the Illawarra, Blacktown and Narrabeen involving people driving through flooded streets.

"It's a timely reminder that during these weather events, where the water is fast and furious, that we ask people to please stay alert and don't drive through floodwaters and please stay off the roads when possible," she said.

One Sydney resident thought creatively about how to protect the family car from hail damage. ( Instagram: stormseal )

Ausgrid said it worked through the night to restore power to about 25,000 homes in the northern beaches, northern suburbs and Central Coast.

The BOM predicts there will be a repeat performance today with storms expected to hit Sydney this afternoon, but conditions are not expected to be as severe.

SES state operational duty controller Greg Murphy said people should think about any plans or travel that may be disrupted this afternoon.

"There are still opportunities for more damage to occur," he said.

"The weather is quite unpredictable but we need to prepare."