This is a revised version of what I think the story for this would be if it was an actual episode of a fictional Doctor Whooves series.



We begin with, like the original episode, with a title screen reminiscent of the original Doctor Who title sequence. We move to Ponyville Schoolhouse where a familiar voice is heard explaining quantum mechanics, the theory of relativity and concept of time travel to a group of young fillies. This is shown to be “guest speaker” Twilight Sparkle(at this point an alicorn). She finishes and then turns to see everypony’s confused faces. Cherilee confusedly thanks Twilight before the bell rings. Spike arrives to deliver an urgent letter to Twilight from Celestia, which requests the presence of the mane six and the Doctor in Canterlot. Twilight then runs out of ponyville and into a field, over a hill where the Tardis comes into view. The door opens, and we see the Doctor(a ponified version of the 11th Doctor). the two embrace and kiss(more on that later). The Tardis phone rings and the Doctor answers, the Tardis is suddenly lifted by Pegasi, under orders of the princesses, who didn’t realise the Doctor was inside. When the Tardis lands Twilight and The Doctor are greeted with the rest of the mane six( Rarity is wearing the Fourth Doctor scarf). Celestia first reveals a painting of “Gallopfrey” the Pony world equivalent of the Doctor’s home planet. They then leave to discuss the matter at hand. Spike spits out a scroll reads it and then appears visibly confused. He does not follow the group and they fail to notice his absence.



The group makes its way down the hallways of Celestia’s castle, passing by every stain glass window showing the mane six in a heroic light. Each window brings with it a flashback to the Doctor’s mind.



The first shows the defeat of Nightmare Moon. The doctor remembers when he first arrived in Equestria in his tardis and first turned into a pony(resembling the 10th Doctor). After exploring he meets a mare named Derpy, Derpy explains to him the ways of Equestria: including Cutie Marks, the various pony types, and Celestia. She explains that the summer sun celebration is occurring in Ponyville and the two head over there. The sun celebration is interrupted by Nightmare Moon. As everypony is panicking Derpy explains Nightmare Moon. The Doctor sees Twilight leaving and chooses to follow her. Doctor and Derpy overhear Twilight and the mane six talking about the elements of harmony and how they can be used to defeat Nightmare Moon. The Doctor chooses to go fight Nightmare Moon on his own, bringing a reluctant Derpy with him. The two journey through the everfree forest and arrive at the old castle, only to find Twilight and the rest of the mane six using them to defeat Nightmare Moon. The next day The Doctor asks Derpy to become his companion and she says yes.



The second window shows the defeat of Discord, while the Doctor was not there he recognizes meeting Discord. We cut to ancient Equestria. The 10th doctor has been separated from Derpy and is visibly wounded with scars all over his body. He is searching for derpy in a place called the cave of truth. He spots the Tardis materialising and runs to it, confused as to what its doing there. He opens it and sees something that is not shown, only his reaction to it. The Doctor backs away in horror and mutters: “ No..It can’t be!” The illusion fades and derpy finds him. He has now been discorded with his hair gray and mane Black, becoming Discord Whooves(He will be referred to as such from now on to avoid confusion). He angrily declares that they are leaving. Derpy says they still have ponies to save but Discord Whooves ignores her and they leave. Discord Whooves bitterly asks where Derpy wants to go next but Derpy with tear filled eyes says she doesn’t want to travel with him anymore. Discord Whooves angrily hits Derpy and kicks her out of the Tardis. Sometime later, Discord Whooves is at a bar drowning his sorrows when a group of mares enter, apparently to celebrate. One of them sees him and tries to cheer him up. He insists he doesn’t need help but she insists that he does and hugs him, telling him: “ There, maybe now you won’t be such a grump.” Discord Whooves slowly yet awkwardly returns the hug and even manages to form a small smile. He introduces himself as The Doctor. She says her name is Twilight Sparkle.



The next window shows the defeat of the changelings. In the flashback, The 10th Doctor is having a picnic with derpy, however when he asks Derpy if she will marry him and she says yes, he accuses her of being a changeling. The two are then attacked by real changelings and flee into the forest. The 10th Doctor runs into the everfree and runs into Angel Bunny by Fluttershy’s college, whom he threatens until he realises he’s not a changeling and just a rabbit. The 10th Doctor finds two Derpy’s, just as he’s trying to figure out which is real and which is the changeling. A portal suddenly opens up and a fez pops out.



The next window(and last one) shows the rescue of the Crystal Empire. We flashback to a battle between the forces of the two princesses and that of Sombra’s crystal empire.As a massive battle is occuring one Celestial soldier is surrounded by Sombra’s shadow warriors, when the Tardis crashes through a wall and saves him. A hooded Stallion appears and speaks to him, followed by a hooded unicorn mare who repels the shadow warriors with her purple aura magic. She then carves the words “ No more” into a wall. Sometime later in a war tent, Celestia and Luna hear about the most recent sighting of the two hooded figures. They learn that they recently stole an unknown alien device from Canterlot archives. Elsewhere, in a desert on an alien planet. The two figures arrive at an abandoned base. they take off their hoods to reveal they are Discord Whooves and Twilight(who are wearing disguises to prevent them from being seen by the princesses before they originally met them). The two have stolen what is revealed to be the moment , a device from gallifrey( or in this case its Pony counterpart: Gallopfrey). They intend to use it to transport the crystal empire into the future(where Twilight will eventually save it). The Tardis uses the moment to create a physical form named Ananta. Only the Doctor can see and speak with Ananta but Twilight believes him as they have encountered many strange things. She explains that she has something to show him and opens a portal from which a fez pops out.

Note: I should point out that Twilight is unable to undiscord the Doctor because she never met him before he was discorded. She was able to undiscord her friends in the series by using her memories of them and cannot do the same to him.



In the present, the mane six and the Doctor are taken to an area of the castle which houses classified objects. The 11th Doctor steps in dust which he asks to be analyzed. The Doctor passes a fez and puts it on.The party arrives at what they were brought there for: a painting with figures that were originally in it that are now missing. A portal opens in front of them. The Doctor claims to remember what is happening and throws his fez in, soon after jumping into it.



The 11th Doctor appears before the 10th Doctor and the two quickly introduce each other and become friends. The 10th Doctor tells both Derpy’s to run in separate directions. In order to keep the portal open the 11th Doctor throws his fez into it but it disappears, shortly after Discord whooves appears through the portal with the fez. The 11th Doctor is disturbed by his presence, while the 10th Doctor does not recognize him but heeds 11’s warning about him being dangerous. The Doctors are surrounded by changelings led by the changeling Derpy. The 11th Doctor shouts out that they are being taken to Canterlot tower through the portal to the mane six and princesses. Celestia understands this and leaves to make preparations for their arrival, when suddenly a mysterious figure attacks her. The pony scientists are also studying the dust, which is believed to be Weeping Pegasi statues that have been destroyed. One figures out that the entities in the paintings destroyed them to hide and they are revealed to be changelings that attack the scientists. Celestia and Twilight leave to Canterlot tower. The mane six are attacked by the changelings, Rarity escapes by tripping a changeling with her scarf. Fluttershy manages to find and rescue the imprisoned other mane six and princesses.



In the past, The Doctors are imprisoned in Canterlot tower(During the Changeling invasion in “A Canterlot Wedding”) and begin to bicker among each other. Meanwhile, Twilight and Celestia enter a Canterlot tower housing the “Equestria Eerie Eye”a base filled with classified alien technology( Celestia notes that it has been made “Tardis proof” since The doctor and Twilight broke in during the crystal empire war to steal the Moment). The Eye is also laced with charms that make anypony who enters forget what they saw. Celestia reveals the Doctor left them time coordinates on the wall of the tower, and that they have Jack Harkness’s time watch held there(he once visited Equestria). The changeling mane six arrive and Celestia reveals herself to be Chrysalis, who acted as a spy while the other changelings infiltrated from inside. Twilight steals the time watch and uses the coordinates to arrive in the past and free the Doctor just as Discord whooves found a way out. The 10th Doctor recognizes Twilight as “ rude purple Unicorn” he saw during the defeat of Nightmare Moon(He is already shown to have somewhat of a crush on her). The changeling Derpy then appears and reveals the changelings are using magic to seal themselves in paintings should their invasion fail and be able to launch a counterattack. Once all the changelings have been sealed away, The 10th Doctor starts insulting the changeling Derpy only for her to reveal herself as the true Derpy. She managed to outsmart her changeling double, she says she’ll go with them only if the Doctor fulfills the promise he made in the forest. The Doctor and Derpy have a small wedding in which they are wed by Twilight(using her status as a Princess) with the other Doctors acting as witnesses. They are wed in secrecy in the royal castle after the Changeling invasion has already been repelled. They then all depart to Canterlot Tower, since they cannot enter the “Tardis proof” tower they have Twilight send a scroll to Spike, which he receives in the past, telling him to take the Painting to the Canterlot Tower.



The freed Mane six and the Princesses arrive and confront the changelings in Canterlot Tower. The Tardis crashes through the painting of Gallopfrey and into the room. The doctors activate the charms, making both the ponies and the disguised Changelings forget which is which. As the two sides negotiate. Twilight speaks with Discord whooves, Ananta appears and takes Discord Whooves back to the timeline he was taken from with the past Twilight(during the crystal empire war), where he is about to use the moment to save the Crystal Empire. The Doctors and Derpy arrive(they do not take the Alicorn Twilight who is 11’s companion with them to avoid a paradox with her younger self who is with Discord Whooves and also because the Alicorn twilight is busy negotiating with the Changelings.) The Doctors start to talk to each other while Derpy speaks with the Discord Whooves timeline Twilight. Derpy accuses Twilight of being in love with the Doctor but Twilight corrects her. She says that she does love him but believes that the Doctor’s lifestyle prevents him from ever standing still and starting a life with someone he loves. Twilight also believes that the Discord effect makes the Doctor more open to his feelings and that if she cures him he will no longer love her, and that she is willing to sacrifice her happiness if it will save millions of lives.(that a undiscorded Doctor would save)



The Doctors come up with a plan to save the Crystal empire without using the moment. They will have Twilight lift the entire Empire into the sky and circle it with all three of their Tardis’s which will transport it thousands of years into the future. They try this plan while Celestia and Luna are engaging in the final battle of the war and are fighting Sombra. Celestia and Luna narrowly escape the disappearing City by taking to the Sky. Sombra is finally defeated by them in the air and falls deep into a canyon in the snowy wasteland. The empire and the canyon Sombra fell in is engulfed in a white light while the two princesses retreat. The empire then vanishes.



After saving the empire, The Doctors all say goodbye and part ways. Discord Whooves reveals to his companion, Twilight that he is planning on using the Moment to return to his own universe. Twilight tries to dissuade him out of this as his future self would not exist. She even points out the hypocracy of him warning her about changing history earlier by selflessly preventing the Crystal empire war and saving millions of lives while he himself is about to alter time for his own selfish reasons and cost billions of lives. Discord Whooves offers to take Twilight with him. She then tries to physically stop him using her magic when he opens the Tardis door to reveal a Portal to his world, but is unable to hold him for long due to her magic being weak after lifting the entire Crystal Empire. Discord Whooves hugs Twilight and holds her head to his hearts to say goodbye. Twilight then sheds tears and says “I’m sorry”. Suddenly she fires a white tiny beam from her horn that pierces through the Doctor’s chest drawing a visible splatter of blood. He changes to a shocked expression. The background vanishes and is replaced with a black void. Symbols of two red hearts appear in the background, a crack appears within the left heart(symbolizing the Doctor’s pain both literally and figuratively). Discord Whooves begins to fall back(I’d like to imagine a song plays hear, something like Dear Sister(mmm whatcha say):



mmm whatcha say?

mmm that you only meant well, well of course you did

mmm whatcha say?

mmm that it’s all for the best because it is.



The Doctor grabs his chest in pain, his face is one of shock and then one of Discorded Anger, before he suddenly flashes with regeneration energy. He asks only why She did it to Twilight and she responds that the only way to stop him was to undiscord him (reasoning with him didn’t work and she was too exhausted to physically stop him) but she couldn’t do this with magic and chose to trigger his regeneration. The Doctor starts to undiscord, his head is the last part to start returning to normal. Discord Whooves’s last words are: “ This is what you get for caring(aimed at himself)”. He bursts back into an explosion of regeneration energy. Standing there is the 10th Doctor(undiscorded). he is now fully healed from his wound. He smiles and stretches his hoof out to Twilight, who smiles and starts reaching out to it while also smiling at finally being able to meet him(Alicorn future Twilight met all three, while past Unicorn Twilight only met the 10th Doctor briefly when they pondered using the moment). Just as their hooves touch The Doctor falls back in pain and starts to regenerate once again.



We cut to some time later, Derpy is attending the annual Gala and is understandably finding it dull. Two Ponies are watching her: Twilight(now an Alicorn) and a pony wearing a bowtie and a fez. Twilight encourages him to go over and talk to her but he says no as he caused her nothing but pain since they met. Twiight convinces him and he reluctantly does so and walks up to Derpy. Twilight watches them and seems to shed a single final tear. The mane six are beside her and rarity points out that she is crying, though Twilight denies this and says that it’s :”Liquid Pride”. They then leave. Twilight calmly yet beautifully sings the Doctor theme as she walks away with her friends, ending her involvement with the Doctor.