If Hillary Clinton wins Tuesday, she’ll head into office under the cloud of two major FBI investigations, including one that’s reportedly “likely” to lead to an indictment.

On Wednesday, Fox News’ Bret Baier reported that the bureau’s probe of possible corruption involving the Clinton Foundation — and, presumably, Clinton’s role as secretary of state — is “far more expansive” than had been reported.

Sources with “intimate knowledge” of the probes told Baier the FBI has turned up “a lot of evidence” — and that the probes “will continue to, likely, an indictment.”

If, that is, they’re not quashed by higher-ups at the Justice Department.

The foundation probe, it turns out, has been under way for a year. On Sunday, the Wall Street Journal reported that four FBI field offices have been reviewing possible influence-peddling via the foundation.

But the Journal also noted that top Justice Department and FBI officials have tried to rein in that probe — notably by nixing any subpoenas. Some agents say they were told flatly to “stand down.”

Clinton sympathizers will argue that it’s the lower-level agents who are out of line — and no regular citizen can really know who’s right. Maybe the field agents aren’t seeing the forest for the trees.

Or maybe the Obama Justice Department has become as partisan as the Obama IRS.

It sure looks bad in light of Attorney General Loretta Lynch’s “tarmac tête-à-tête” with Bill Clinton — and President Obama’s various pronouncements that probes of Hillary will never find anything bad.

This atop FBI chief James Comey’s stunner last week about newly unearthed emails “that appear to be pertinent” to his other Clinton probe. Baier’s sources say some emails “are not duplicates” of ones seen before and “could potentially be classified in nature.”

At a minimum, it all guarantees that Congress will be probing Justice’s conduct — and demanding some sort of special prosecutor take over the case(s) should Clinton win the White House.

Déjà vu: The ’90s Clinton scandals were relentless. The worst ended with the Senate declining to remove Bill Clinton from office after the House impeached him.

Now, even before Election Day, Hillary is facing two more serious probes. Americans already distrust her — and it seems those worries will only grow if she’s elected.