(CNN) Puerto Rico's emergency management director resigned Friday as the island's slowly recovers nearly two months after Hurricane Maria made landfall.

In announcing the resignation of Abner Gómez, effective Saturday, Gov. Ricardo Rosselló praised the work of his emergency management chief following Hurricanes Irma and Maria, which both hit in September.

The governor also announced that Lt. Gen. Jeffrey Buchanan, whom the Pentagon appointed to lead all military relief efforts, will be reassigned outside the island next week.

Puerto Rico's power authority says electricity generation stands at about 44% , but it's not clear how many homes and businesses that power is reaching. And it's uncertain how many of the US territory's roughly 3.4 million citizens remain without power as they struggle through Maria's aftermath.

A massive power outage also struck the capital of San Juan on Thursday after a major north-south transmission line failed, according to the Puerto Rico Electric Power Authority, known as PREPA.

Emergency management chief had been under fire

Héctor Pesquera, secretary of Puerto Rico's Department of Public Safety, will take over emergency management duties.

Rosselló did not give a reason for Gómez's resignation.

In his resignation letter, Gomez said he stepped down to let Pesquera name his own emergency management team, led by someone with the public safety secretary's "full confidence."

The emergency management director came under fire after the island's El Nuevo Dia newspaper reported that he took a two-week vacation shortly after Maria made landfall on September 20.

Buchanan, a three-star star general and commander of US Army North (5th Army), arrived in Puerto Rico in late September as the military was tasked with improving distribution networks of relief supplies.

'We've moved out of the crisis'

"The cessation of Gen. Buchanan's work does not mean that the military is leaving," Rosselló said in a statement. "His departure marks a positive transition. We have not finished the recovery, but there is progress in the missions that have been carried out."

A two-star general will replace Buchanan, according to the governor.

"From my perspective, we've moved out of the crisis," Buchanan told reporters.

"We're moving out of response and most places are moving on toward recovery. ... FEMA is going to be here for very much the long term and the rebuilding effort, and we in the military generally don't do that."

The changes come as the island's government faces questions about the official death toll of 55 from the massive storm.

Government officials acknowledged this week that nearly 500 more people died in Puerto Rico in September than in the same month the previous year.

An official with Puerto Rico's forensics institute told reporters that 472 more people died in September than in the same month in 2016 -- up from 2,366 to 2,838.

Wanda Llovet, director of the Demographic Register, said about 82 deaths a day were reported from September 1 through September 19, compared with some 117 per day during the last 11 days of the month.

"We are not going to say there could be more or less," Pesquera, whose oversees the count, said of hurricane-related fatalities. "We've quantified the number of deaths."

Pesquera has staunchly defended government efforts to generate an accurate count under extremely trying conditions: Most lines of communication were cut, and many roads on the island were initially impassable.