Kelly told colleagues that the decision to give Kushner top-secret clearance was not supported by career intelligence officials, and he memorialized Trump’s request in an internal memo, according to two people familiar with the memo and the then-chief of staff’s concerns.

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It is unclear how Kelly responded to Trump’s directive. But by May, Kushner had been granted a permanent security clearance to view top-secret material — a move that followed months of concern inside the White House about his inability to secure such access.

Kushner’s attorney publicly described the process as one that had gone through normal channels, a description that Kelly did not view as accurate, according to a person familiar with his reaction.

The former chief of staff, who left the administration at the beginning of this year, did not immediately respond to a request for comment.

Trump’s push to get Kushner clearance — and the chief of staff’s concerns about it — was first reported by the New York Times, which also reported that then-White House Counsel Donald McGahn had concerns about Kushner’s clearance.

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White House press secretary Sarah Sanders declined to weigh in Thursday evening, saying: “We don’t comment on security clearances.”

Peter Mirijanian, a spokesman for Kushner lawyer Abbe Lowell, said in a statement that “in 2018, White House and security clearance officials affirmed that Mr. Kushner’s security clearance was handled in the regular process with no pressure from anyone.”

“That was conveyed to the media at the time, and new stories, if accurate, do not change what was affirmed at the time,” he added.

An attorney for McGahn declined to comment.

Congressional Democrats said Thursday that they plan to aggressively scrutinize the role Trump played in securing Kushner’s clearance. Rep. Elijah E. Cummings (D-Md.), chairman of the House Oversight Committee, noted that his commitee has already launched an investigation into the White House security clearance process and has yet to receive a response to its request for documents.

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“The Committee expects full compliance with its requests as soon as possible, or it may become necessary to consider alternative means to compel compliance,” Cummings said in a statement.

House Intelligence Committee Chairman Adam B. Schiff (D-Calif.) said in a statement late Thursday that his panel, as well as the House Oversight Committee, will continue in their investigation of the White House’s security clearance process.

“The revelation that President Trump personally intervened to overrule White House security officials and the Intelligence Community to grant a Top Secret security clearance to his son-in-law, Jared Kushner, is the latest indicator of the President’s utter disregard for our national security and for the men and women who sacrifice so much every day to keep us safe,” Schiff said. “There is no nepotism exception for background investigations.”

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Both Trump and his daughter, Ivanka, have publicly denied the president was involved in securing a clearance for Kushner. The president told the New York Times in a Jan. 31 interview that he did not direct Kelly or similar officials to grant a clearance for his son-in-law, and Ivanka Trump told ABC News earlier this month that her father was not involved in the process.

In the first year of the administration, Kushner held an interim security clearance that allowed him to view both top-secret and sensitive compartmented information, which is classified intelligence related to sensitive sources. With that designation, he has been able to attend classified briefings, get access to the president’s daily intelligence report and issue requests for information to the intelligence community.

But there was widespread concern in the White House about his lack of a permanent clearance.

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In February 2018, Kelly limited the access of employees with interim security clearances to top-­secret information in the wake of abuse allegations against a top aide. That new policy caused Kushner’s clearance to be downgraded from “Top Secret/SCI” level to the “Secret” level, a far lower level of access to classified information.

At the time, Trump said he would defer the question of Kushner’s access to his chief of staff.

“I will let General Kelly make that decision, and he’s going to do what’s right for the country,” the president said during a news conference. “And I have no doubt that he will make the right decision.”

The top-secret clearance Kushner was granted last year gave him access to relatively basic classified information. Lowell said at the time that Kushner’s “application was properly submitted, reviewed by numerous career officials and underwent the normal process.”

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Kushner did not receive a clearance to see the most highly classified intelligence the government produces, known as sensitive, compartmented information, or SCI, The Washington Post reported last July.

That meant that Kushner was effectively barred from seeing information gleaned from human spies or from the government’s vast signals intelligence apparatus. It’s that kind of intelligence that forms the basis of the president’s daily intelligence briefing and that is customarily given to senior policymakers and Cabinet officials.

Kushner’s lack of SCI access suggests that the CIA has not signed off on his receiving that level of intelligence, security experts said. He had struggled to obtain even his top-secret clearance, in part because of his contacts with certain foreign government officials, The Post previously reported.

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Some foreign officials, whose communications were intercepted by the U.S. intelligence, privately discussed how they could manipulate Kushner, taking advantage of his complex business arrangements, financial difficulties he had at the time and his lack of foreign-policy experience, according to current and former U.S. officials familiar with intelligence reports on the matter, who spoke on the condition of anonymity because of the sensitivity of the subject.

Kushner’s foreign entanglements caused anxiety among U.S. intelligence officials who are ultimately responsible for deciding whether he should have SCI clearances, that step above top secret, according to U.S. officials with knowledge of internal deliberations.

The decision to grant an SCI clearance is usually made by the agency that generated the information. The CIA, for example, grants access to human intelligence gathered from agents and operatives. The NSA grants access to intercepted communications and intelligence generated by spying on foreign computer networks.