At the height of the outbreak in April, a New Yorker was dying almost every two minutes — more than 800 per day, or four times the city’s normal death rate. And though the daily toll has recently slowed, hundreds of bodies are still emerging each day from private homes and hospitals.

While hospitals bore the initial brunt of the crisis as sick people flooded emergency rooms, the sheer volume of human remains has pushed the system for caring for the dead to its limits, too: Hospital morgues, funeral homes, cemeteries and crematories are all overflowing and backed up.

The scale of the problem was brought into sharp relief on Wednesday afternoon, when the police found dozens of decomposing bodies stashed inside two trucks outside a funeral home on Utica Avenue in Brooklyn. The owner, Andrew T. Cleckley, said he had nowhere else to put them, adding simply: “I ran out of space.”

What happened in Brooklyn appears to be an extreme case, and state health officials said on Thursday they would investigate the matter. But in the last two months, funeral home directors have begun to store bodies in viewing rooms and chapels, turning up their air-conditioning systems to avoid decomposition. Some are transporting bodies to other cities and states to be cremated.

Some hospitals ran out of body bags — the city has since distributed 20,000 — and others have used forklifts to transfer piles of corpses into makeshift mobile morgues. So many people have been dying at home that the medical examiner's office has turned to teams of soldiers working around the clock to pick them up.