Federal and local investigators seized records from the New York City Housing Authority on Wednesday as part of a criminal probe at the embattled agency, according to sources familiar with the raid.

Agents from the inspector general of the US Department of Housing and Urban Development, the US Environmental Protection Agency and the city Department of Investigation executed a warrant on the agency’s 49th Avenue warehouse in Long Island City used to store NYCHA records, sources said.

They removed computers from the fifth-floor offices, which contained documents related to lead paint and asbestos inspections, a source said.

The seizure came two days after a damning lawsuit filed Monday by Manhattan US Attorney Geoffrey Berman accused NYCHA of scheming to hide the dilapidated condition of the city’s public housing from federal inspectors.

The suit also charged that officials failed to conduct required lead paint inspections and then lied about it to the feds.

As part of their brazen cover-up, Berman said, NYCHA workers cut water to entire buildings so leaks would go unnoticed and posted bogus “Danger: Do Not Enter” signs to keep HUD inspectors away from certain areas.

A “Quick Fix Tips” guide allegedly taught workers how to paper over missing ceiling tiles and drain covers using painted plywood or cardboard.

The DOI is working in concert with the US Attorney’s Office, sources said.

The HUD inspector general investigates crimes involving the federal agency.

Additional reporting by Max Jaeger