In addition to the marijuana bill, Mr. Cuomo and lawmakers had not been able to reach agreements on disclosure rules for teacher evaluations and on a requirement that college and high school coaches report possible acts of sexual abuse to law enforcement. Lawmakers were also unable to reach agreement on proposals to raise the state’s minimum wage and to create a system of public financing for elections.

Mr. Cuomo, a Democrat, had set a deadline of midnight on Monday for his office and legislative leaders to reach deals on any legislation that they wanted to pass before the end of the session. That would allow them to comply with a three-day waiting period, required by the State Constitution, to allow the public and lawmakers to review the language of legislation before it is voted upon.

But late Monday night, the governor introduced a bill to deal with the teacher-evaluation issue. There was no indication whether legislative leaders would go along with it. As midnight passed, no other actions were announced.

In the past, Mr. Cuomo has waived the three-day at waiting period, including in March when he brokered deals on redistricting and pension cuts and last year when he pressed for the legalization of same-sex marriage. But that tactic has drawn criticism from government watchdog groups and even a state judge, who last year accused the governor of “arm-twisting” in his dealings with the Legislature over the marriage law.

Mr. Cuomo, apparently chastened by the criticism, has said that he would not waive the waiting period this week. He told Mr. Paterson that he wanted to make a statement that communicated the “transparent, orderly functioning of this Legislature over this last week.” Confident everything will proceed according to plan, his office has already invited lawmakers to a party at the Executive Mansion scheduled for Thursday.