Chile peppers have long played an important role in the diets of Mesoamerican people. Capsicum annuum is one of five domesticated species of chiles and is one of the primary components of these diets. However, little is known regarding the original location of domestication of C. annuum and the genetic diversity in wild relatives. Researchers have now found a large amount of diversity in individuals from the Yucatan Peninsula, making this a center of diversity for chiles.

Without the process of domestication, humans would still be hunters and gatherers, and modern civilization would look very different. Fortunately, for all of us who do not relish the thought of spending our days searching for nuts and berries, early civilizations successfully cultivated many species of animals and plants found in their surroundings. Current studies of the domestication of various species provide a fascinating glimpse into the past.

A recent article by Dr. Seung-Chul Kim and colleagues in the June 2009 issue of the American Journal of Botany explores the domestication of chiles. These hot peppers, found in everything from hot chocolate to salsa, have long played an important role in the diets of Mesoamerican people, possibly since as early as ~8000 B.C. Capsicum annuum is one of five domesticated species of chiles and is notable as one of the primary components, along with maize, of the diet of Mesoamerican peoples. However, little has been known regarding the original location of domestication of C. annuum, the number of times it was domesticated, and the genetic diversity present in wild relatives.

To answer these questions, Dr. Kim and his team examined DNA sequence variation and patterns at three nuclear loci in a broad selection of semiwild and domesticated individuals. Dr. Kim et al. found a large amount of diversity in individuals from the Yucatan Peninsula, making this a center of diversity for chiles and possibly a location of C. annuum domestication. Previously, the eastern part of central Mexico had been considered to be the primary center of domestication of C. annuum. On the basis of patterns in the sequence data, Dr. Kim et al. hypothesize that chiles were independently domesticated several times from geographically distant wild progenitors by different prehistoric cultures in Mexico, in contrast to maize and beans which appear to have been domesticated only once.

Geographical separation among cultivated populations was reflected in DNA sequence variation. This separation suggests that seed exchange among farmers from distant locations is not significantly influencing genetic diversity, in contrast to maize and beans seeds, which are traded by farmers across long distances. Less genetic diversification was seen in wild populations of C. annuum from distant locales, perhaps as a result of long-distance seed dispersal by birds and mammals.

Across the three loci studied, Dr. Kim and colleagues found an average reduction in diversity of 10% in domesticated individuals compared with the semiwild individuals. Domesticated chiles in traditional agricultural habits, however, harbor unique gene pools and serve as important reservoirs of genetic diversity important for conserving biodiversity.

This work was conducted primarily by Araceli Aguilar-Meléndez as her dissertation project under the guidance of Drs. Kim and Mikeal Roose in the Department of Botany and Plant Sciences at the University of California at Riverside. The research was supported by the University of California Institute for Mexico and the United States (UC MEXUS), El Coneso Nacional de Ciencia y Technología (CONACYT), and a gift from the McIlhenny Company. Aguilar-Meléndez, Kim, and their colleagues plan to continue research on this remarkably variable and economically important spice in Mesoamerica.