A church may be a church, and a temple a temple, but through the prism of emotion that still grips many New Yorkers almost a decade after 9/11, a mosque can apparently represent a lot of things.

In the last few months, Muslim groups have encountered unexpectedly intense opposition to their plans for opening mosques in Lower Manhattan, in Brooklyn and most recently in an empty convent on Staten Island.

Some opponents have cited traffic and parking concerns. But the objections have focused overwhelmingly on more intangible and volatile issues: fear of terrorism, distrust of Islam and a linkage of the two in opponents’ minds.

“Wouldn’t you agree that every terrorist, past and present, has come out of a mosque?” asked one woman who stood up Wednesday night during a civic association meeting on Staten Island to address representatives of a group that wants to convert a Roman Catholic convent into a mosque in the Midland Beach neighborhood.