Using cryo-electron microscopy, researchers have revealed atomic-level details of the interactions between ISRIB, a brain-boosting experimental drug, (propeller-shaped molecule, center), and its target protein, eIF2B. Credit: J. Tsai et al./Science 2018

A detailed picture of a brain-boosting experimental drug could one day help researchers tailor it for use in human clinical trials.

Researchers have shown that the drug, nicknamed ISRIB, completely eliminates learning and memory deficits in mice with concussions. Now scientists have a clearer view of how ISRIB works—by pinning together parts of a protein involved in cellular stress.

Howard Hughes Medical Institute (HHMI) Investigator Peter Walter and colleagues describe the action with a new atomic-scale protein structure reported March 29, 2018, in the journal Science.

Tracking how ISRIB interacts with its protein target could potentially help researchers modify the drug to treat traumatic brain injury and neurodegeneration in humans, says Walter, a biochemist at the University of California, San Francisco. "I think ISRIB could be a therapy for many different cognitive disorders," he says.

Cells in our bodies respond to stressors such as viral infections, starvation, and injury in the same way: by restricting the production of new proteins. This "cellular stress response" helps keep cells alive by buying them time to recover.

"But in many cases, this response can be maladaptive," Walter says. Traumatic brain injury persistently turns on the cellular stress response—and the resulting drop in protein production may slow critical cognitive processes. Learning and storing memories, for example, requires brain cells to produce proteins that help create long-lasting connections in the brain.

An experimental drug nicknamed ISRIB (animation zooms in on the white and red molecule at the end) acts as a molecular staple, pinning together identical subcomplexes of a protein called eIF2B. Credit: Walter Lab/HHMI/UCSF

In 2013, after screening more than 100,000 molecules for drugs that alter the stress response, Walter and colleagues identified 28 potential candidates, including ISRIB. ISRIB, short for integrated stress response inhibitor, keeps a key protein production line operating in stressed cells, the team discovered. But ISRIB didn't dissolve well in watery solutions, so researchers didn't think it was a viable drug—at first. A closer look revealed that ISRIB was 1,000 times more potent than many of the other molecular options. So even the tiny amount of ISRIB that can enter cells was enough to provoke a response.

Stressed cells dosed with the drug began synthesizing proteins again—and remarkably, ISRIB enhanced learning and memory in mice. Last year, the researchers discovered that ISRIB also restored long-term memory in mice with concussions.

The team knew from previous experiments that ISRIB prevents the cellular stress response by stabilizing a protein called eIF2B, which typically helps turn on protein production.

In stressed cells, eIF2B is blocked from activating another protein complex that initiates protein synthesis. But when stressed cells receive ISRIB, eIF2B remains active, and cells continue to produce proteins. To better understand how ISRIB activates and stabilizes eIF2B, Walter and his colleagues wanted to see exactly how the molecule and protein interacted.

Together with Adam Frost, a structural biologist and HHMI faculty scholar at UCSF, the researchers used cryo-electron microscopy to obtain a detailed structure of ISRIB bound to eight eIF2B components. "We can see with almost atomic resolution where the drug binds to the protein," Walter says. "It's really amazing to see a small molecule under a microscope."

The researchers saw that the propeller-shaped ISRIB sits deep inside eIF2B and acts as a molecular staple to pin two identical subcomplexes together. "The current idea is that ISRIB holding the eIF2B complex together may be enough to stabilize the protein and increase its activity," Walter says.

UCSF has licensed ISRIB to Calico, a company founded by Alphabet, Google's parent company, to research aging. Knowing how ISRIB and its protein target fit together could help researchers there tailor the molecule specifically for human clinical trials for neurodegeneration and traumatic brain injury treatment. So far, ISRIB does not appear to be toxic, perhaps because it only works in stressed cells and not in cells functioning normally, Walter says.

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More information: "Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule" Science (2018). "Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule"(2018). science.sciencemag.org/cgi/doi … 1126/science.aaq0939 "Binding of ISRIB reveals a regulatory site in the nucleotide exchange factor eIF2B" Science (2018). science.sciencemag.org/cgi/doi … 1126/science.aar5129 Journal information: Science