The Amazon feeds into the Atlantic Ocean in a plume where salt and freshwater mix. The unique pH, salinity, debris and light levels create a unique ecosytem perfect for a massive reef network.

Scientists have discovered a huge coral reef system lurking beneath the muddy waters of the Amazon.

The network of coral reefs, which is about 600 miles (1,000 kilometers) long and is home to a hidden ecosystem of colorful and bizarre creatures, was found at the mouth of the Amazon River, where freshwater from the river empties into the briny waves of the Atlantic Ocean.

Extraordinary expedition

The Amazon River is the world's largest river by volume, harboring 20 percent of the freshwater on Earth. It is also home to a stunning array bizarre and as-yet-undocumented creatures. [The World's 10 Longest Rivers]

Patricia Yager, a marine scientist at the University of Georgia and lead investigator of the River-Ocean Continuum of the Amazon project, and her colleagues had originally set sail on the expedition to sample species from the mouth of the Amazon River, according to a statement.

But one of the team members, biologist Rodrigo Moura from the Universidade Federal do Rio de Janeiro, had seen a published study from the 1970s "that mentioned catching reef fish along the continental shelf and said he wanted to try to locate these reefs," Yager said.

So the team set out on a hunt for mysterious reefs. The first obstacle was finding out exactly where the researchers of that past study had done their surveying. The 1970s journal article didn't have GPS coordinates, so the team went to the general area and used sound waves to create pictures of the river bottom. Then they pulled up seafloor samples to confirm the presence of the reef.

Intricate web of life

Graduate student Nara Oliveira and Rodrigo Moura of the Federal University of Rio de Janeiro sort through reef animals that were brought up from the newfound Amazon River coral reef. (Image credit: Federal University of Rio de Janeiro)

It turned out the reef was home to a hidden carnival of life not evident at the murky water's surface, including loads of reef fish species, a wide variety of sponges (as well as sponge-eating fish), algae and, of course, coral species.

"We brought up the most amazing and colorful animals I had ever seen on an expedition," Yager said.

The team then returned to the site in 2014 to do a full catalogue the rainbow of reef species and the reef's characteristics, which they reported April 22 in the journal Science Advances.

The reef changes over its extent. At the southern edge of the reef, sea creatures get more sunlight, and the reef is dominated by traditional coral and creatures that use light to make food.

"But as you move north, many of those [species] become less abundant, and the reef transitions to sponges and other reef builders that are likely growing on the food that the river plume delivers. So the two systems are intricately linked," Yager said.

Yet the amazing Amazon reef system was endangered almost from the moment of its discovery. It turned out that oil exploration is planned on top of the reef, while ocean acidification and warming threatens the coral reefs just as it does throughout the world's oceans, Yager said.

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