Tuesday 8 April 2014 3:25pm



Dr Peter Fineran

A team led by Dr Peter Fineran of the Department of Microbiology and Immunology are studying the genetic basis of adaptive immunity in bacteria that cause potato 'soft rot' and in E. coli bacteria. Through their recent collaboration they have found that these bacterial immune systems are much more robust and responsive than previously thought.

Their latest findings, which appear in the leading US journal PNAS, have implications for improving our understanding of bacterial evolution, including the spread of antibiotic resistance genes.

The researchers are investigating an adaptive immune system, termed CRISPR-Cas, which is found in half of all bacterial species and in almost all single-celled microbes in the archaea domain.

CRISPR-Cas’s role in providing immunity was only discovered in the past decade. The system creates a genetic memory of specific past infections by viruses and plasmids, which are small mobile DNA molecules that can move between organisms.

Dr Fineran says the system steals samples of the invader’s genetic material and stores them in a memory bank so it can immediately recognise future exposures and neutralise the attack. It can store up to 600 samples and can also pass on these memories to subsequent generations of bacteria.

It had been thought that the system had an Achilles heel because invaders that had acquired too many mutations could no longer be recognised as they did not match the stored sample closely enough.

“What we have now discovered is that while the viruses and plasmids can evade direct recognition by acquiring multiple mutations, the system is primed to quickly generate a new immunity by grabbing a new sample of the mutated genetic material.”



“It’s a remarkably flexible and robust immune system for such simple single-celled organisms.”

Dr Fineran says the system reflected the ancient and continuing co-evolutionary arms race between bacteria on one side, and viruses and plasmids on the other.

Viral infections of bacteria also exert a powerful yet invisible effect on the entire planet, says Dr Fineran.

“Their silent but vast and ongoing war underpins everything from how global nutrient cycles—which rely on bacteria to produce half of the Earth’s biomass —operate, to how human pathogens evolve,” he says.

“For example, the bacteria that cause cholera and diphtheria have been infected by viruses that provide genes coding for toxins, which converted these bacteria into significant human pathogens.”

Plasmids are also key players in moving antibiotic resistance genes between different bacterial species.

“So, discovering more about exactly how bacterial immune systems combat plasmid transfer and acquisition is of considerable interest,” he says.

Dr Fineran’s research was supported by a Rutherford Discovery Fellowship from the Royal Society of New Zealand and his co-authors include researchers from several institutions in the Netherlands. One co-author, Raymond Staals, has recently joined Dr Fineran’s Laboratory under a Division of Health Sciences Career Development Post-doctoral Fellowship.

For further information, contact:

Dr Peter Fineran

Department of Microbiology & Immunology

University of Otago

Tel 64 3 479 7735

Email peter.fineran@otago.ac.nz

Peter Fineran Lab

Publication details:

Degenerate target sites mediate rapid primed CRISPR adaptation

Peter C. Fineran, Matthias J. H. Gerritzen, María Suárez-Diez, Tim Künne, Jos Boekhorst, Sacha A. F. T. van Hijum, Raymond H. J. Staals, and Stan J. J. Brouns

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