Rheumatoid arthritis mechanisms may vary by joint

At a Glance An epigenomic analysis of rheumatoid arthritis in knee and hip joints revealed unique patterns that suggest disease mechanisms may differ from joint to joint.

The findings could open the door to development of more effective, personalized therapies for rheumatoid arthritis.

Sebastian Kaulitzki/Hemera/Thinkstock

Rheumatoid arthritis is an autoimmune disease in which the immune system mistakenly attacks the body’s own tissue, such as the membranes that line joints. This can cause pain, swelling, stiffness, and loss of function in joints throughout the body. For unknown reasons, different joints are affected differently in people with rheumatoid arthritis.

The causes of rheumatoid arthritis aren’t completely understood. Several genes involved in the immune system have been associated with a tendency to develop rheumatoid arthritis. Environmental factors—such as cigarette smoking, diet, and stress—may also play a role in triggering the disease. A better understanding of the molecular mechanisms at work in the disease may lead to more effective approaches to treatment.

A research team led by Drs. Gary S. Firestein and Wei Wang at the University of California, San Diego, has been studying fibroblast-like synoviocytes (FLS), a type of cell that lines joints and contributes to joint destruction in rheumatoid arthritis. In past work, the team gained insights into how these cells function using epigenetics—the study of factors that change the way genes are read, or expressed, without changing the DNA sequence itself. They identified patterns of DNA methylation—a common epigenetic modification that affects gene expression—in FLS that differ between rheumatoid arthritis and osteoarthritis.

In their new study, the team studied FLS obtained from total joint replacement surgeries in 30 people with rheumatoid arthritis and 16 with osteoarthritis. Their work was funded in part by NIH’s National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) and National Institute of Allergy and Infectious Diseases (NIAID). The study appeared on June 10, 2016, in Nature Communications.

The scientists used computer analyses to group the samples according to the thousands of methylation differences they found across the genome. As expected, methylation patterns differed between rheumatoid arthritis FLS and osteoarthritis FLS. The team found the patterns also differed between rheumatoid arthritis FLS isolated from knees and hips.

The researchers next examined the biological pathways affected and identified several in FLS that were differentially methylated between rheumatoid arthritis knees and hips. Gene expression analysis confirmed that genes and pathways differ between the joint locations. Many of these pathways are related to immune function and inflammation.

The team next examined drugs developed for use in rheumatoid arthritis. They compared the drugs’ targets to the joint-specific biological pathways they uncovered. This analysis suggested that several promising drugs might have been assessed differently if these pathways had been taken into account. This analytical method could form the basis for developing precision medicine approaches to rheumatoid arthritis.

“We showed that the epigenetic marks vary from joint to joint in rheumatoid arthritis,” Firestein says. “Even more importantly, the differences involved key genes and pathways that are designed to be blocked by new rheumatoid arthritis treatments. This might provide an explanation as to why some joints improve while others do not, even though they are exposed to the same drug.”

—by Harrison Wein, Ph.D.