Added:

Fluxed-Crystals

Mine Factory Reloaded-Compat Magical Crops

Updated mods:

AE2 stuff

Ancient Warfare 2

AsieLib

BiblioCraft

Binnie Mods

Biomes O' Plenty

Blood Magic

Botania

Calculator

Carpenter's Blocks

Compact Machines

Computronics

Ender Zoo

Ex-Astris

Extra Cells

Funky-Locomotion

GalacticraftCore

Galacticraft-Planets

Gendustry

Hunger Overhaul

industrialcraft 2 api

industrialcraft 2

Mekanism

MekanismGenerators

MekanismTools

MicdoodleCore

Minechem

Not Enough Items

Open Blocks

Open Computers

Open Peripheral Core

Open Peripheral Integration

Pam's HarvestCraft

Pneumatic Craft

Power Converters

Quiver Bow

Random Things

Refined Relocation

RF Tools

Steves Addons

Tinkers' Construct

Thaumcraft

Thaumic Tinkerer

TiC Tooltips

ttCore

Tweaks--RRino (custom mod to blacklist items with Torcherino, thanks to Jared)

Waila

Ztones

Removed:

Remote IO - this was causing the redstone issues and rolling back would allow for a world destroying bug.

Config Changes:

Fix for Advanced Warfare 2 and brewcraft recipe, they should now work.

Misc: