The Max Planck Institute for Evolutionary Anthropology, in Leipzig, is a large, mostly glass building shaped a bit like a banana. The institute sits at the southern edge of the city, in a neighborhood that still very much bears the stamp of its East German past. If you walk down the street in one direction, you come to a block of Soviet-style apartment buildings; in the other, to a huge hall with a golden steeple, which used to be known as the Soviet Pavilion. (The pavilion is now empty.) In the lobby of the institute there’s a cafeteria and an exhibit on great apes. A TV in the cafeteria plays a live feed of the orangutans at the Leipzig Zoo.

Svante Pääbo heads the institute’s department of evolutionary genetics. He is tall and lanky, with a long face, a narrow chin, and bushy eyebrows, which he often raises to emphasize some sort of irony. Pääbo’s office is dominated by a life-size model of a Neanderthal skeleton, propped up so that its feet dangle over the floor, and by a larger-than-life-size portrait that his graduate students presented to him on his fiftieth birthday. Each of the students painted a piece of the portrait, the over-all effect of which is a surprisingly good likeness of Pääbo, but in mismatched colors that make it look as if he had a skin disease.

At any given moment, Pääbo has at least half a dozen research efforts in progress. When I visited him in May, he had one team analyzing DNA that had been obtained from a forty- or fifty-thousand-year-old finger bone found in Siberia, and another trying to extract DNA from a cache of equally ancient bones from China. A third team was slicing open the brains of mice that had been genetically engineered to produce a human protein.

In Pääbo’s mind, at least, these research efforts all hang together. They are attempts to solve a single problem in evolutionary genetics, which might, rather dizzyingly, be posed as: What made us the sort of animal that could create a transgenic mouse?

The question of what defines the human has, of course, been kicking around since Socrates, and probably a lot longer. If it has yet to be satisfactorily resolved, then this, Pääbo suspects, is because it has never been properly framed. “The challenge is to address the questions that are answerable,” he told me.

Pääbo’s most ambitious project to date, which he has assembled an international consortium to assist him with, is an attempt to sequence the entire genome of the Neanderthal. The project is about halfway complete and has already yielded some unsettling results, including the news, announced by Pääbo last year, that modern humans, before doing in the Neanderthals, must have interbred with them.

Once the Neanderthal genome is complete, scientists will be able to lay it gene by gene—indeed, base by base—against the human, and see where they diverge. At that point, Pääbo believes, an answer to the age-old question will finally be at hand. Neanderthals were very closely related to modern humans—so closely that we shared our prehistoric beds with them—and yet clearly they were not humans. Somewhere among the genetic disparities must lie the mutation or, more probably, mutations that define us. Pääbo already has a team scanning the two genomes, drawing up lists of likely candidates.

“I want to know what changed in fully modern humans, compared with Neanderthals, that made a difference,” he said. “What made it possible for us to build up these enormous societies, and spread around the globe, and develop the technology that I think no one can doubt is unique to humans. There has to be a genetic basis for that, and it is hiding somewhere in these lists.”

Pääbo, who is now fifty-six, grew up in Stockholm. His mother, a chemist, was an Estonian refugee. For a time, she worked in the laboratory of a biochemist named Sune Bergström, who later won a Nobel Prize. Pääbo was the product of a lab affair between the two, and, although he knew who his father was, he wasn’t supposed to discuss it. Bergström had a wife and another son; Pääbo’s mother, meanwhile, never married. Every Saturday, Bergström would visit Pääbo and take him for a walk in the woods, or somewhere else where he didn’t think he’d be recognized.

“Officially, at home, he worked on Saturday,” Pääbo told me. “It was really crazy. His wife knew. But they never talked about it. She never tried to call him at work on Saturdays.” As a child, Pääbo wasn’t particularly bothered by the whole arrangement; later, he occasionally threatened to knock on Bergström’s door. “I would say, ‘You have to tell your son—your other son—because he will find out sometime,’ ” he recalled. Bergström would promise to do this, but never followed through. (As a result, Bergström’s other son did not learn that Pääbo existed until shortly before Bergström’s death, in 2004.)

From an early age, Pääbo was interested in old things. He discovered that around fallen trees it was sometimes possible to find bits of pottery made by prehistoric Swedes, and he filled his room with potsherds. When he was a teen-ager, his mother took him to visit the Pyramids, and he was entranced. He enrolled at Uppsala University, planning to become an Egyptologist.

“I really wanted to discover mummies, like Indiana Jones,” he said. Mostly, though, the coursework turned out to involve parsing hieroglyphics, and instead of finding it swashbuckling Pääbo thought it was boring. Inspired by his father, he switched first to medicine, then to cell biology.

In the early nineteen-eighties, Pääbo was doing doctoral research on viruses when he once again began fantasizing about mummies. At least as far as he could tell, no one had ever tried to obtain DNA from an ancient corpse. It occurred to him that if this was possible, then a whole new way of studying history would open up.

Suspecting that his dissertation adviser would find the idea silly (or worse), Pääbo conducted his mummy research in secret, at night. With the help of one of his former Egyptology professors, he managed to obtain some samples from the Egyptian Museum in what was then East Berlin. In 1984, he published his results in an obscure East German journal. He had, he wrote, been able to detect DNA in the cells of a mummified child who’d been dead for more than two thousand years. Among the questions that Pääbo thought mummy DNA could answer were what caused pharaonic dynasties to change and who Tutankhamun’s mom was.

While Pääbo was preparing a version of his mummy paper for publication in English, a group of scientists from the University of California at Berkeley announced that they had succeeded in sequencing a snippet of DNA from a zebralike animal known as a quagga, which had been hunted to extinction in the eighteen-eighties. (The DNA came from a hundred-and-forty-year-old quagga hide preserved at the National History Museum in Mainz.) The leader of the team, Allan Wilson, was an eminent biochemist who had, among other things, come up with a way to study evolution using the concept of a “molecular clock.” Pääbo sent Wilson the galleys of his mummy paper. Impressed, Wilson replied asking if there was any space in Pääbo’s lab; he might like to spend a sabbatical there. Pääbo had to write back that he could not offer Wilson space in his lab, because, regrettably, he didn’t have a lab—or even, at that point, a Ph.D.