The Army have said Chelsea Manning will lose her military healthcare benefits following President Barack Obama’s decision to free her from prison.

In his final days in office, the outgoing President has issued 64 pardons and 209 commutations, including granting the release of Manning. The transgender US Army private, who was jailed in 2010 after handing thousands of secret documents to WikiLeaks, will now be freed on 17 May instead of her scheduled 2045 release.

A spokeswoman for the Army said Manning, who came out as transgender a day after her 2013 sentencing, would relinquish her entitlement to military transgender benefits.

Obama uses final news conference to defend Chelsea Manning decision

The army has been providing Manning, who was serving a 35-year military sentence at Fort Leavenworth prison, with treatment for gender dysphoria. This includes hormone treatments.

Manning was also a candidate for gender-reassignment surgery which would have been funded by the Pentagon’s new policy for transgender troops.

“If Pvt Manning is discharged with a dishonorable discharge, she will lose her entitlement to (military) benefits, including gender-transition care at (military) medical treatment facilities,” Army spokeswoman Cynthia Smith told USA Today on Wednesday.

Smith explained Manning’s dishonourable discharge was included in the terms of the sentence imposed on her in 2013.

While the commutation reduces Manning's sentence, it is not a pardon which many campaigners were calling for.

However she did explain that Manning would be able to appeal her discharge determination but said if it was unsuccessful she would be dishonourably discharged from the Army. Smith added that Manning would also be prohibited from receiving Veterans Affairs Department benefits under that status.

In December of last year, a court filing revealed a military doctor treating Manning denied her request to have her female gender reflected in her military records. Manning asked her military medical provider, Dr Ellen Galloway, to recommend the change since she has “achieved stability in her female gender” but her attorneys said Dr Galloway denied the request.

Manning also filed the lawsuit to seek better medical care for her gender dysphoria, including being allowed to follow female grooming procedures. Gender dysphoria is a condition of potentially severe distress or anxiety that some transgender people endure.

Mr Obama defended his choice to commute Manning's sentence at his final press conference as President on Wednesday, saying she had served a “tough prison sentence”.

Protesters urge Obama to commute Chelsea Manning's sentence Show all 12 1 /12 Protesters urge Obama to commute Chelsea Manning's sentence Protesters urge Obama to commute Chelsea Manning's sentence torbakhopper/Flickr Protesters urge Obama to commute Chelsea Manning's sentence Garry Knight/Flickr Protesters urge Obama to commute Chelsea Manning's sentence People hold signs calling for the release of imprisoned wikileaks whistleblower Chelsea Manning while marching in a gay pride parade in San Francisco, California June 28, 2015. Manning has appealed to an Army court to overturn her court-martial conviction, a court filing released on Thursday said. Reuters Protesters urge Obama to commute Chelsea Manning's sentence Around twenty activists associated with the Chelsea Manning support group rally in front of the White House in Washington DC, Sunday May 11, 2014. Stephen Melkisethian/Flickr Protesters urge Obama to commute Chelsea Manning's sentence Daily Chalkupy/Flickr Protesters urge Obama to commute Chelsea Manning's sentence Around twenty activists associated with the Chelsea Manning support group rally in front of the White House in Washington DC, Sunday May 11, 2014. Protesters urge Obama to commute Chelsea Manning's sentence Twitter Protesters urge Obama to commute Chelsea Manning's sentence Abigail Edward holds up a sign advocating the release of WikiLeaks whistle blower Chelsea Manning along the Gay Pride parade route in San Francisco, California on Sunday, June, 26, 2016. Josh Edelson/AFP/Getty Images Protesters urge Obama to commute Chelsea Manning's sentence Demonstration for Chelsea Manning in London, England, United Kingdom. Chelsea Manning (born Bradley Edward Manning) is a United States Army soldier who was convicted by court-martial in July 2013 of violations of the Espionage Act and other offenses, after disclosing to WikiLeaks nearly three-quarters of a million classified or unclassified but sensitive military and diplomatic documents. Manning was sentenced in August 2013 to 35 years imprisonment, with the possibility of parole in the eighth year, and to be dishonorably discharged from the Army. Manning is a trans woman who, in a statement the day after sentencing, said she had felt female since childhood, wanted to be known as Chelsea, and desired to begin hormone replacement therapy. From early life and through much of her Army life, Manning was known as Bradley; she was diagnosed with gender identity disorder while in the Army. Mike Kemp/Getty Protesters urge Obama to commute Chelsea Manning's sentence Chelsea M Queer Friends/Twitter Protesters urge Obama to commute Chelsea Manning's sentence Instagram Protesters urge Obama to commute Chelsea Manning's sentence Jil Love Revolution/Instagram

“[It is] that the sentence that she received was very disproportionate relative to what other leakers had received and that she had served a significant amount of time, that it made sense to commute and not pardon her sentence,” Obama added. “I feel very comfortable that justice has been served.”

Manning, arrested in 2010 as Bradley Manning, was convicted in a military court in 2013 of leaking more than 700,000 secret military and State Department documents to WikiLeaks while working as an intelligence analyst in Iraq.