Two Melbourne Bureau of Meteorology employees are believed to be at the centre of a probe by Australian Federal Police for allegedly mining cryptocurrencies using the organisation's powerful computers.

Police confirmed officers raided a business premises at Docklands on February 28 in relation to an ongoing investigation, but declined to comment further, with the bureau also staying quiet about the ongoing probe.

Two IT workers at the bureau were questioned over allegedly running an elaborate operation involving the use of the organisation's computers to mine cryptocurrencies, the ABC reported on Thursday.

AAP