Thousands of worshippers have returned to the al-Aqsa mosque in Jerusalem after a two-week standoff over Israeli security measures imposed on the site.

There were clashes with police as Muslims entered the holy compound – known as Temple Mount in Judaism and Haram al-Sharif in Islam – with security forces using stun grenades, tear gas and rubber bullets in an attempt to control the crowd, injuring 113 people.

Sound bombs were also used as the crowd tried to surge through both the Hutta and Lion's Gates. The violence reportedly broke out after one of the gates was closed in an attempt to control the crowd flow.

Worshippers were urged to return for afternoon prayers on Thursday after the site's religious authority Waqf declared that it was satisfied Israel had removed new security measures such as metal detectors and CCTV cameras.

Metal detectors removed from holy site by Israel authorities

The Israeli authorities had argued the new security measures were necessary after Palestinian gunmen killed two Israeli police officers near the compound on 14 July.

The decision was met with uproar by Palestinians and Muslims across the world, who viewed it as an Israeli attempt to exert more control over the politically sensitive site.

Muslims pray inside the Haram al-Sharif compound yesterday, known to Jews as the Temple Mount (Getty)

Almost two weeks of tension have followed, including worshippers praying outside al-Aqsa in protest and street clashes which have left at least four Palestinians dead. In the occupied West Bank, a Palestinian attacker killed three Israeli settlers in their home, an attack Israeli Prime Minister Benjamin Netanyahu said on Thursday warranted the death penalty.

In an effort to deescalate the growing crisis – some of the worst bloodshed in Jerusalem in recent years – Mr Netanyahu's cabinet voted to dismantle the security on Monday. The move was seen as a rare victory for Palestinians.

International observers, including the UN’s Middle East envoy Nickolay Mladenov, had urged both sides to come to a resolution before Friday prayers, which usually draw tens of thousands worshippers.

Israel: From independence to intifada Show all 7 1 /7 Israel: From independence to intifada Israel: From independence to intifada The proclamation of the state of Israel is read by David Ben-Gurion in Tel Aviv on 14 May 1948 © EPA Israel: From independence to intifada Sixty years on, an illuminated flag is shown in Tel Aviv this week © PA Israel: From independence to intifada Young Jews celebrate the proclamation of the state of Israel in 1948 © AFP/Getty Images Israel: From independence to intifada Palestinian children throw stones at a retreating Israeli tank during an incursion into the West Bank city of Jenin in August 2003 following a suicide bombing in Jerusalem © AP Israel: From independence to intifada How Israel's borders have changed - click image to enlarge © Independent Graphics Israel: From independence to intifada From 1948-50, the world's mostcelebrated war photographer Robert Capa captured extraordinary imagesof Israel's pioneering settlers. Here, Turkish immigrants arrive in Haifa © Robert Capa/Getty Images Robert Capa/Magnum Israel: From independence to intifada The Negba kibbutz, where the walls have been damaged by shells fired during the Israeli-Arab war © Robert Capa/Getty Images Robert Capa/Magnum

Both the Palestinian Authority and Hamas had previously called for a “day of rage” if the status quo at the site had not been reinstated by Friday.

It is not clear if the Waqf's approval – which was supported by the Palestinian political factions – will be enough to diffuse the tensions. The Israeli security forces remain on high alert.