Governor Andrew M. Cuomo set the stage for an ambitious congestion pricing plan when he declared that it was “an idea whose time has come.”

But that time is not now.

There was little about congestion pricing in the state budget negotiated Friday by Mr. Cuomo and state lawmakers despite months of lobbying by advocates, a six-figure media campaign, and rallies by transit riders. The most significant development was a new surcharge that will be tacked on to every ride in for-hire vehicles in Manhattan south of 96th Street: $2.50 for yellow taxis; $2.75 for other for-hire vehicles, including Ubers and Lyfts; and 75 cents for car pool rides such as Via and UberPool.

Notably missing was the congestion zone that was the centerpiece of a congestion pricing plan, laid out by a state task force to reduce gridlock on the streets and raise money for the city’s struggling subway, which is operated by the Metropolitan Transportation Authority. Under that plan, unveiled in January, drivers could have been charged a daily fee — $11.52 for passenger cars, $25.34 for trucks — to enter a congestion zone in Manhattan, from 60th Street south to the Battery, at busy times.

The budget agreement drew criticism from a coalition of transportation advocacy groups, which expressed disappointment that months of pushing for congestion pricing had yielded so little.