The man initially charged with kidnapping a 23-year-old woman in Boston has now also been arraigned on 10 counts of aggravated rape.

Victor Pena, 38, pleaded not guilty on Wednesday in Suffolk Superior Court as new, horrific details emerged in the case against him.

Pena now stands accused of abducting and repeatedly raping the woman over three days while forcing her to drink alcohol, read aloud from a Spanish Bible and feeding her nothing but pineapple chunks from a can, NBC News reported.

Police found the victim alive inside Pena's Charlestown, Massachusetts apartment on January 22.

Pena was indicted by a grand jury on the 11 charges last week.

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New horrific details have emerged in the case of Victor Pena, 38 (pictured left), who has pleaded not guilty on Wednesday in a Massachusetts court to kidnapping and repeatedly raping a 23-year-old woman in Boston in January

The woman went missing in January after a night out with friends, and said she woke up the next day on a bare mattress in Pena's filthy apartment, according to prosecutors.

Court documents say that when police entered Pena’s home three days later on January 22, the victim was crying and had a 'horrified look on her face.'

The woman told a detective 'she was being held against her will,' and that Pena took her phone and 'refused to let her leave the apartment for the entire time she was held there,' according to earlier filings.

Now it's been revealed that Pena allegedly told the woman he was saving her from the street and the two were going to start a family together, as he kept her in his home and fed her only chunks of canned pineapple.

He's also believed to have said he took the woman with him because she reminded him of a daughter he said he had not seen in 10 years.

Prosecutors said Pena offered the woman ramen noodles but she couldn't eat it because she has a wheat intolerance, but that Pena still forced the woman to drink whiskey.

The woman is also said to have offered to help clean Pena's apartment as a way to stall while she tried to figure out an escape.

Prosecutors said she feared to make a move against Pena out of worry she would miss her one opportunity to regain her freedom.

Pena's older brother, Jose, told the Boston Globe his sibling is mentally challenged as a result of a medical procedure performed on him aged seven, during which his brain was deprived of oxygen.

Jose said that based on his brother's version of events, which he relayed to him in a phone call from jail, Pena did not kidnap the woman.

According to the paper, Pena told his older brother that he met the 23-year-old woman on January 19, and that she went with him willingly and spent the night at his home.

The next morning, the victim allegedly told Pena she was afraid her father would be angry with her and decided to stay in his apartment.

Jose said Pena told him the victim busied herself by cleaning his cluttered apartment.

The paper also revealed that Pena does not have a job and lives off Social Security payments because he is mentally disabled.

He has a son from a previous relationship, but he has played no role in the child's upbringing, according to the boy's mother, who told the Globe Pena had never been violent.

Several friends and neighbors said they feared the worst after the woman's disappearance and were overjoyed that she beat the odds and came home alive.

Pena's older brother, Jose, said his sibling is mentally challenged as a result of a medical procedure performed on him aged seven, during which his brain was deprived of oxygen. Jose said that based on his brother's version of events, which he relayed to him in a phone call from jail, Pena did not kidnap the woman

The victim had last been seen at Hennessy's bar (pictured) on January 19 before being found at Pena's apartment on January 22

Before being abducted, the victim was last seen near Hennessy's bar in Boston at around 11pm on January 19, where she had been with her family and friends.

Police say surveillance footage captured Pena holding the woman later that night, and they say it was clear 'she did not go along willingly.'

Police located the woman and Pena in the city's Charlestown neighborhood on January 22, after spotting her in the surveillance footage at the subway.

When they visited his home, Pena only answered after a locksmith started drilling holes in the door, ABC reported.

At that time, Pena is said to have given the woman her phone back and told her to text someone that she was OK.

Pena was seen in photos obtained exclusively by DailyMail.com leading the victim out a subway station after she was approached by him and another man outside of Hennessy's bar on January 19.

Pena and the other man were observed asking the woman to walk with them in the area of Congress and State Streets near Boston's City Hall.

One of the men appeared to walk ahead while Pena 'places his arm around the woman and directs her toward the State Street MBTA station.'

Pena has a history of run-ins with the law going back 15 years, according to reports

In 2009, a woman filed a complaint with police alleging that Pena was stalking her on the T, which is Boston's subway and light rail system

Twenty minutes later Pena still has his arm wrapped around the petite, 5-foot-2 blue-eyed brunette as they exit at the Bunker Hill Community MBTA station, Boston police officials said.

At that time the second man is no longer seen.

Then at 12:13am, the victim and Pena are picked up by surveillance video walking toward Bartlett Street in the Charlestown neighborhood of Boston.

The victim's cell phone then pinged in the notorious Bunker Hill Housing Development.

Charlestown is over a mile away from the Irish pub where the woman was last seen on January 19 before turning up in Pena's home.

Police said the victim had left the bar with another man but they determined that he was not connected with her disappearance after he was put in a cab by his friends.

Victor Pena, left, is arraigned on kidnapping charges at the Charlestown Division of the Boston Municipal Court in Charlestown, Massachusetts, on January 23

In court in January, Pena was pictured wearing a white jumpsuit, and with his wrists cuffed and ankles shackled

He was heard sobbing and muttering to himself before a judge ordered him to undergo a mental health evaluation

In court in January, Pena was pictured wearing a white jumpsuit, and with his wrists cuffed and ankles shackled.

Pena was overheatd crying and talking quietly to himself at the Charlestown Division of the Boston Municipal Court in Charlestown, reported The Boston Globe.

Court psychologist Jodie Shapiro, who examined Pena after his arrest, told the judge the suspect acted in a 'bizarre' manner during their interview, including sucking his thumb and praying for forgiveness.

Shapiro said Pena told her he was having paranoid thoughts and hearing voices, and purported to have no understanding of what was happening.

The psychologist said that while Pena appeared to show signs of mental illness, she suggested it was possible he was playing up some of the symptoms.

Pena has a history of run-ins with the law, according to WCVB-TV.

In 2009, a woman filed a complaint with police alleging that Pena was stalking her on the T, which is Boston's subway and light rail system.

Two other women also complained about Pena's behavior, WCVB-TV reported, but no charges were ever filed.

Pena has also been found to have violated restraining orders in 2008 and 2014, the television station reported.

Those charges, however, were eventually dismissed.

WPRI reported that he was arrested last summer at Twin River Casino in Lincoln on charges of cheating and obtaining money under false pretenses. That case is still pending.

In 2004, Pena was arrested and charged with assault, but that charge was dropped after he successfully met pre-trial probation requirements.

Pena remains in custody at this time without bail pending a dangerousness hearing which is set for April 10, the prosecutor's office said.