Spam-filtering Algorithm Learns to Recognize Full Set of Behaviors in Jelly-like Hydra

Much of what biologists have learned about animal behavior over the years has come from careful observation and painstaking notes. There could soon be an easier way.

In a new study in the journal eLife, researchers at Columbia University show how an algorithm for filtering spam can learn to pick out, from hours of video footage, the full behavioral repertoire of tiny, pond-dwelling Hydra. A close relative of coral, jellies and sea anemones, Hydra is so primitive that it lacks a backbone or brain. But when it moves, feeds and evades predators, it behaves in predictable ways that a computer can recognize.

By comparing Hydra’s behaviors to the firing of its neurons, the researchers hope to eventually understand how its nervous system, and that of more complex animals, works. “People have used machine learning algorithms to partly analyze how a fruit fly flies, and how a worm crawls, but this is the first systematic description of an animal’s behavior,” said the study’s senior author, Rafael Yuste, a neuroscientist at Columbia University and a member of Columbia’s Data Science Institute. “Now that we can measure the entirety of Hydra’s behavior in real-time, we can see if it can learn, and if so, how its neurons respond.”

Hydra’s ancestors appeared on Earth some 700 million years ago, before the Cambrian explosion that gave rise to most modern species. Instead of a brain, hundreds of neurons run along its narrow, translucent body coordinating behaviors that range from basic — curling into a ball to avoid predators — to sophisticated — somersaulting to get around.

In an earlier study in Current Biology, Yuste and his colleagues recorded all of its neurons firing in real-time and discovered four sets of neural circuits that control four distinct elongation and bending behaviors, paving the way to understand how Hydra’s nervous system regulates its behavior.

In the current study, the team went a step further by attempting to catalog Hydra’s complete set of behaviors. To do so, they applied the popular “bag of words” classification algorithm to hours of footage tracking Hydra’s every move. Just as the algorithm analyzes how often words appear in a body of text to pick out topics (and flag, for example, patterns resembling spam), it cycled through the Hydra video and identified repetitive movements.