Alina Zagitova, a 15-year-old figure skater, was the only Russian to have won a gold medal in Pyeongchang by the time the committee voted. The men’s hockey team won a second gold on Sunday, defeating Germany.

The Russians will now leave the Olympics the way they entered: in neutral uniforms that provided a constant reminder of the damage done to Russia’s sporting reputation by the scheme, a state-controlled effort to replace drug-tainted urine samples with clean ones, according to the investigations.

President Vladimir V. Putin of Russia and other top sports officials from the country have denied that the doping program reached the highest levels of their government.

The effects of the scandal have disrupted the last two Games, shifting attention from athletics to litigation. Before the 2016 Summer Olympics in Rio de Janeiro, where Russia participated as a nation while some of its athletes were banned because of the scandal, the country tried to use the sports courts to increase its number of participants. It made a similar effort in the final days leading up to these Winter Olympics. Both attempts were unsuccessful.

A Russian delegation that included Evgenia Medvedeva, the silver medalist in women’s figure skating, made a presentation to the executive board.

The bobsledder Nadezhda Sergeeva’s positive drug test the day before did not help Russia’s cause. She was the second Russian to fail a drug test here. When the I.O.C. banned Russia on Dec. 5, the organization said a condition of the country’s reinstatement would be a commitment to global antidoping regulations. Russia was also required to pay a $15 million fine.

“This is not a decision everyone will be happy with,” Hoevertsz said after Sunday’s vote. “We will be criticized.”