Federal independent MP Andrew Wilkie says Parliament should have the chance to debate the future of suspended Labor MP Craig Thomson.

Fair Work Australia released its report into the Health Services Union on Monday.

The report alleges Mr Thomson, a former HSU official, spent almost $6,000 of union members' funds on escort services and about $270,000 on his campaign to become a federal MP.

Mr Thomson continues to deny the allegations raised in the report but has moved to the crossbench after Prime Minister Julia Gillard suspended him from the Labor Party at the end of last month.

Yesterday the Coalition moved to suspend standing orders to debate suspending Mr Thomson from Parliament for a fortnight.

Mr Wilkie say it is one of the most important issues to confront the Parliament in recent years.

"It was weighing very heavily in the chamber yesterday, those dreadful findings of the Fair Work Australia report," he said.

"I think it has left everyone very troubled and I think some of my crossbench colleagues as well are thinking deeply about this, and how we do respond."

Fellow independent Tony Windsor says he is not comfortable with the allegations levelled at Mr Thomson and is looking into how Parliament should deal with them.

He says he is wrestling with the issue but accepts everyone is entitled to due process.

"That report is just such a shocking report, the findings are quite dramatic and I don't know what can be done about that," he said.

"But I've still got an open mind in terms of the so-called options."

Despite being suspended from the party, Mr Thomson has pledged his continuing support for Labor.